Table 1. Data
content of rSNPBase 3.0 (as of September 15, 2017)
and comparison of the current
and
previous versions.
|
Involved SNPs in
three version |
rSNPBase |
rVarBase |
rSNPBase 3.0 |
||
|
|
rSNPs |
22,846,898 |
87,345,304 |
117,452,549 |
|
|
|
LD-proxies
of rSNPs (non-rSNPs) |
2,281,874 |
1,626,737 |
2,096,231 |
|
|
SNP related
regulatory elements |
|
||||
|
|
Transcription factor binding regions (TFBRs) |
7,562,592 |
|||
|
|
Chromatin interactive regions (CIRs) |
212,837 |
|||
|
|
Topologically associated domains (TADs) |
38,916 |
|||
|
|
Mature microRNA (miRNA) regions |
2,794 |
|||
|
|
Predicted miRNA target sites |
384,284 |
|||
|
|
Long non-coding RNA (lncRNA) regions |
211,749 |
|||
|
|
Circular RNA (circRNA) regions |
312,673 |
|||
|
SNP related
regulatory element-target gene (E-G) pairs |
|
||||
|
|
TFBR-gene pairs |
9,484,132 |
|||
|
|
CIR - gene pairs |
321,247 |
|||
|
|
TAD – gene pairs |
48,482 |
|||
|
|
miRNA - gene pairs |
|
|||
|
|
|
Experimentally
supported |
37,781 |
||
|
|
|
Predicted |
384,284 |
||
|
|
lncRNA - gene pairs |
4,092 |
|||
|
Extend annotations |
|
||||
|
|
Diseases(variant-disease pairs) |
97,896 |
|||
|
|
eQTLs (SNP-mRNA pairs) |
4,201,218 |
|||